KisSplice

A local transcriptome assembler for SNPs, indels and AS events

Documentation

Tutorial

  • Detailed example on a small dataset used in KisSplice training sessions: here

Workflows

Related talks

  • Complementarity of assembly-first and mapping-first approaches for alternative splicing annotation and differential analysis from RNAseq data, ITMO Technologies pour la Sante, Aviesan, Nov 2017 pdf
  • De novo identification of SNPs from RNA-seq data in non-model species, Seminaire MIAT INRA Toulouse, Fev 2017 pdf