KisSplice

A local transcriptome assembler for SNPs, indels and AS events

KisSplice wrapper for Galaxy:

If you wish to install KisSplice on the Galaxy instance of your laboratory/university/... You just have to follow step by step the instructions:

  • Dowload the archive containing two required files (.xml and .py) :

    KisspliceGalaxyW.tar.gz (for KisSplice 2.2.0 version - 2014-06-12)

  • Modify the file galaxy-dist/tools_conf.xml in your Galaxy instance directory by adding these lines:

    <section id="id_kissplice" name="KisSplice">

    <tool file="kissplice/kissplice.xml">

    <section>

  • Then create a directory where you will put the two files:

    mkdir <path> /galaxy-dist/tools/kissplice

    cp kissplice.xml <path> /galaxy-dist/tools/kissplice

    cp kisspliceGWrapper.py <path> /galaxy-dist/tools/kissplice